Pyscenic 转录因子分析feather V2 问题
2024-06-23 00:00:59  阅读数 895

dbs = [RankingDatabase(fname=fname, name=name(fname)) for fname in db_fnames]

进行至这一步的时候,出现如下错误:"hg19-tss-centered-5kb-10species.mc9nr.feather" is a cisTarget Feather database in Feather v1 format, which is not supported anymore. Convert them with "convert_cistarget_databases_v1_to_v2.py" (https://github.com/aertslab/create_cisTarget_databases/) to Feather v2 format.

将feather V1 转换为V2后,出现新的问题:ValueError: cisTarget database filename "hg19.feather" does not end with ".((motifs|tracks)_vs_(regions|genes)|(regions|genes)_vs_(motifs|tracks)).(scores|rankings).feather".

似乎不是更改文件名就可以解决的问题